Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015943004.1_cds_XP_016486316.1_77165
CDS Infomation

[gene=LOC107806636] [db_xref=GeneID:107806636] [protein=polygalacturonase At1g48100-like] [protein_id=XP_016486316.1] [location=join(40069..40386,41151..41282,41692..41919,42006..42053,42136..42343,42949..43139,43285..43677)] [gbkey=CDS]
Sequence

ATGGGAGGATTTAGTTTTAGGAACTTCACATTTATGTTCATAGTAGCATTTCTTGTTTGG
TCATCAAATGTAGAGACTTGTTATGCAAGAAGAGGCAGGCATTGGAGACAAACAACAACT
TCCTCTGCTTCTTTGTACAAGAAGAAAGGAAAGTCTCACCATCATAATAATGGGAGCAAG
TCGAAGCCAAAACACTCGTCTCCGCCAAGTATGCCAACAAACCCGCCAAGAAAAGGCTAC
GACGATGTGCCTTCGTCCACCATCTTCGACGTAAGAAGTTTCGGTGCCACTGGAGATGGC
AAGACTGATGACACTAAGGCATTTCAAGCTGCATGGGCAGCTGCTTGTAAAGTGGAAGCT
TCGACGTTTGTCGTTCCGTCACAATATGTATTCCTTGTCGGACCAATTTCATTCTCAGGT
CCATACTGTCAGCACAACATTGTTTTTCAGCTTGACGGAACAATAATTGCTCCAGTAGAT
GCCAAATCTTGGGGTTCAGGTCTTATGCAATGGCTTGAATTTACCAAATTGGTTGGGATT
ACAGTTAAAGGAAGCGGGGTAATTGATGGGAGAGGTTCAGTTTGGTGGCAAGATACCCCA
TATGATGATCCTCTAGATGATGAACTAAAACTAATCATCCCATTAAACAAGACATCATTG
AGATATCCTCCAATTCCTCTAAATAGCTCACTTGGTGGTGGAAAAATGCCAAGCATTAAG
CCAACGGCACTTCGATTCTATGGGAGTTTTAATGTTACTGTAACAGGCATCACAATTCAG
AATAGTCAACAATGCCATCTCAAATTTGACAACTGCATAGGGGTAACAGTATACAATTTC
ACTGTCTCATCTCCTGGTGATAGTCCTAATACAGATGGAATCCATTTACAGAACTCCAAA
GACGTGCTAATCCGCAGTTCCAACATTGCGTGTGGAGATGACTGTGTCTCCATACAAACT
GGATGCACCAATGTGTATGTACACAACATAAATTGTGGACCAGGACATGGAATCAGCATT
GGAAGTCTGGGGAAAGACAACACAAAGGCTTGTGTTTCAAACATTACGGTCAAAGATGTT
GTTATGCAAAACACAATGAATGGTGTCAGGATTAAGACATGGCAGGGAGGGTCAGGGTCA
GTACAAGGAGTGTTTTTCTCGAACATTCAAGTTTCAGAAGTCCAACTACCAATTGTAATT
GATCAATTCTATTGCGACAAGAGCAAATGTAAGAACCAGACATCTGCAGTGGCTTTATCA
GGAATCAACTTTGAAAGAATTAGAGGAACATATACAGTAAAACCAGTGCATCTAGCATGC
AGTGACAGTATGCCATGTCAAGACGTGACCTTGACGGATATCCAACTAAAGCCAATACAA
GAGCGTTACCACATGTATGATCCATATTGTTGGCAGACATTCGGAGAGTTGTATACTCCT
ACTCTACCTCCAATTGATTGTTTACAAGTCGGTAAACCATCGAGCAACAGAATTCAGGGA
GATCATGATCAATGCTAG

Peptide Sequence

PEP ID

XP_016486316.1
PEP Infomation

PREDICTED: polygalacturonase At1g48100-like [Nicotiana tabacum]
Sequence

MGGFSFRNFTFMFIVAFLVWSSNVETCYARRGRHWRQTTTSSASLYKKKGKSHHHNNGSK
SKPKHSSPPSMPTNPPRKGYDDVPSSTIFDVRSFGATGDGKTDDTKAFQAAWAAACKVEA
STFVVPSQYVFLVGPISFSGPYCQHNIVFQLDGTIIAPVDAKSWGSGLMQWLEFTKLVGI
TVKGSGVIDGRGSVWWQDTPYDDPLDDELKLIIPLNKTSLRYPPIPLNSSLGGGKMPSIK
PTALRFYGSFNVTVTGITIQNSQQCHLKFDNCIGVTVYNFTVSSPGDSPNTDGIHLQNSK
DVLIRSSNIACGDDCVSIQTGCTNVYVHNINCGPGHGISIGSLGKDNTKACVSNITVKDV
VMQNTMNGVRIKTWQGGSGSVQGVFFSNIQVSEVQLPIVIDQFYCDKSKCKNQTSAVALS
GINFERIRGTYTVKPVHLACSDSMPCQDVTLTDIQLKPIQERYHMYDPYCWQTFGELYTP
TLPPIDCLQVGKPSSNRIQGDHDQC

Transcript Sequence

Gene sequence data has not been registered.